
Six months pass since Old Miltia was destroyed by the appearance of Proto Ω. In response to the Gnosis phenomenon, which has been accelerating its rate of expansion throughout the universe, the Galaxy Federation government and autonomous states hurry to implement the grand anti-Gnosis Zohar Project.
However, the Gnosis began attacking major cities on planets throughout the galaxy. While investigating this "Gnosis terrorism," Shion learn that the interstellar network U.M.N. and her father Suou Uzuki were involved with the attacks. Knowing this, she quits Vector Industries and teams up with Scientia, an anti-U.M.N. organization she came across while investigating the Gnosis terrorism, and begins working to expose Vector's secrets.
Six more months pass. The year is now T.C. 4768, and the final chapter of this saga is about to unfold.